Researchers building a private knowledge graph
Use block references, PDFs, flashcards, and queries to connect long-running research notes.
Skip if:
You want the simplest possible folder of Markdown files.

Open source alternative to Notion, Roam Research and Capacities
Last verified
SiYuan is a local-first, block-based personal knowledge management system with bidirectional links, full-text search, and end-to-end encrypted cloud sync. AGPL-3.0 licensed.
Use block references, PDFs, flashcards, and queries to connect long-running research notes.
You want the simplest possible folder of Markdown files.
Run a richer knowledge system with local or self-controlled sync options.
You need polished real-time team collaboration more than personal knowledge depth.
Hosted knowledge tools make notes convenient, but they also centralize private research, documents, and personal workflows in someone else’s workspace. Power users who rely on backlinks, PDFs, flashcards, and structured queries need a local-first system that still supports rich editing.
SiYuan supports block references, embeds, and two-way links, giving PKM users a more granular model than page-only notes.
The editor keeps Markdown compatibility while supporting outlines, block zoom, math, charts, flowcharts, and large documents.
Docker deployment, WebDAV, and S3 support help users keep notes under their own storage plan.
SiYuan is better when block-level references, local storage, Docker deployment, and privacy-first knowledge management matter. Notion is stronger for hosted team workspaces, while Obsidian is simpler for local Markdown vaults and plugin-heavy personal notes. SiYuan fits users who want granular blocks plus self-controlled sync options.
SiYuan can replace Notion for personal knowledge management when block references, local control, and privacy matter. Notion is stronger for hosted team workspaces.
SiYuan has a block-based model, WYSIWYG editing, SQL query embeds, flashcards, and built-in PDF annotation. Obsidian is simpler for Markdown vaults and plugin-driven workflows.
Yes. The README lists Docker deployment and self-controlled sync options such as WebDAV and S3.
#1 in the Notion guide
Full Notion replacement for small teams
#2 in the Notion guide
Docs, whiteboards, and databases in one workspace
#3 in the Notion guide
Polished team wiki and internal knowledge base
#4 in the Notion guide
Markdown-native docs that agents and teammates edit together
Run SiYuan on your own server
Hostinger sets SiYuan up as a one-click app on a VPS.
Deploy on HostingerFeatured
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